I don't see how this helps you if the root cause is the boat sitting in the salt water for extended periods?

?
If you have multiple pumps working off a single thru-hull?

? Try closing the sea-cock then back flushing with FW thru the live-well discharge and pump out with the other pump. You may still get marine growth in the thru-hull fitting and scoop but your pumps and lines will remain clear.
If it is a single pump, back flush with the sea-cock open then close the valve when you leave the boat in the water. BTW, this should be done regardless.